Volume 25 Supplement 2

The Applications of Bioinformatics in Genome Research

Research

Publication of this supplement has not been supported by sponsorship. Information about the source of funding for publication charges can be found in the individual articles. The articles have undergone the journal's standard peer review process for supplements. The Supplement Editors declare that they have no competing interests.

Tainan, Taiwan12-14 December 2022

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Editors:

Jung-Hsien Chiang: National Cheng Kung University

Jens Stoye: Universitat Bielefeld

Akihiro Fujimoto: The University of Tokyo

The supplement also has papers in BMC Genomics

Inference of single-cell network using mutual information for scRNA-seq data analysis

With the advance in single-cell RNA sequencing (scRNA-seq) technology, deriving inherent biological system information from expression profiles at a single-cell resolution has become possible. It has been know...

Authors: Lan-Yun Chang, Ting-Yi Hao, Wei-Jie Wang and Chun-Yu Lin

Citation: BMC Bioinformatics 2024 25(Suppl 2):292

Content type: Research Published on: 5 September 2024
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MethylSeqLogo: DNA methylation smart sequence logos

Some transcription factors, MYC for example, bind sites of potentially methylated DNA. This may increase binding specificity as such sites are (1) highly under-represented in the genome, and (2) offer addition...

Authors: Fei-Man Hsu and Paul Horton

Citation: BMC Bioinformatics 2024 25(Suppl 2):326

Content type: Research Published on: 9 October 2024

The Correction to this article has been published in BMC Bioinformatics 2025 25:394
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DNA-protein quasi-mapping for rapid differential gene expression analysis in non-model organisms

Conventional differential gene expression analysis pipelines for non-model organisms require computationally expensive transcriptome assembly. We recently proposed an alternative strategy of directly aligning ...

Authors: Kyle Christian L. Santiago and Anish M. S. Shrestha

Citation: BMC Bioinformatics 2024 25(Suppl 2):335

Content type: Software Published on: 24 October 2024
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Correction: MethylSeqLogo: DNA methylation smart sequence logos

Authors: Fei-Man Hsu and Paul Horton

Citation: BMC Bioinformatics 2025 25(Suppl 2):394

Content type: Correction Published on: 18 April 2025

The original article was published in BMC Bioinformatics 2024 25:326
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The Applications of Bioinformatics in Genome Research

Research

Inference of single-cell network using mutual information for scRNA-seq data analysis

MethylSeqLogo: DNA methylation smart sequence logos

DNA-protein quasi-mapping for rapid differential gene expression analysis in non-model organisms

Correction: MethylSeqLogo: DNA methylation smart sequence logos

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