Table 9 Ablation study of k-mer in FCGR on distantly related and final datasets
From: PCVR: a pre-trained contextualized visual representation for DNA sequence classification
Settings | Dist. related | Final | ||||
|---|---|---|---|---|---|---|
k | patch size | Supk. | Phyl. | Supk. | Phyl. | Genus |
6 | 8 | 89.76 | 73.02 | 99.02 | 96.45 | 75.45 |
5 | 4 | 92.81 | 73.09 | 98.96 | 96.36 | 73.51 |
4 | 2 | 89.30 | 68.76 | 98.44 | 94.92 | 70.01 |