Table 5 Results of the one-sided Wilcoxon signed-rank test
From: PCVR: a pre-trained contextualized visual representation for DNA sequence classification
Method pair | Median diff | Cohen’s d | P-value | Corrected p-value | Significant |
|---|---|---|---|---|---|
PCVR-Base vs. MMseqs2 | 6.21 | 0.77 | 0.016 | 0.016 | \(\checkmark \) |
PCVR-Base vs. MMseqs2 tax. | 4.07 | 0.68 | 0.016 | 0.016 | \(\checkmark \) |
PCVR-Base vs. minimap2 | 12.28 | 1.13 | 0.008 | 0.013 | \(\checkmark \) |
PCVR-Base vs. DeepMicrobes | 8.22 | 0.72 | 0.008 | 0.013 | \(\checkmark \) |
PCVR-Base vs. BERTax | 4.53 | 0.50 | 0.008 | 0.013 | \(\checkmark \) |
PCVR-Large vs. MMseqs2 | 6.68 | 0.84 | 0.016 | 0.016 | \(\checkmark \) |
PCVR-Large vs. MMseqs2 tax. | 4.54 | 0.75 | 0.016 | 0.016 | \(\checkmark \) |
PCVR-Large vs. minimap2 | 12.75 | 1.18 | 0.008 | 0.016 | \(\checkmark \) |
PCVR-Large vs. DeepMicrobes | 8.08 | 0.79 | 0.008 | 0.016 | \(\checkmark \) |
PCVR-Large vs. BERTax | 5.94 | 0.58 | 0.008 | 0.016 | \(\checkmark \) |
PCVR-Large vs. PCVR-Base | 0.64 | 0.10 | 0.016 | 0.016 | \(\checkmark \) |