Table 3 Performance comparison in terms of weighted micro AveP
From: PCVR: a pre-trained contextualized visual representation for DNA sequence classification
Method | Closely related | Distantly related | Final | ||||
|---|---|---|---|---|---|---|---|
| Â | Supk. | Phyl. | Supk. | Phyl. | Supk. | Phyl. | Genus |
MMseqs2 | 91.71 | 85.72 | 62.24 | 41.46 | 96.57 | 92.94 | 75.44 |
MMseqs2 tax. | 93.99 | 86.69 | 67.69 | 43.62 | 97.89 | 93.55 | 75.86 |
minimap2 | 85.00 | 76.01 | 42.67 | 19.88 | 92.61 | 86.68 | 66.26 |
DeepMicrobes | 97.14 | 87.18 | 67.47 | 35.80 | 98.15 | 92.38 | 73.45 |
BERTax | 95.68 | 84.46 | 89.91 | 54.21 | 98.66 | 95.20 | 73.82 |
PCVR-Base | 98.67 | 95.08 | 95.88 | 69.37 | 98.94 | 96.29 | 94.93 |
PCVR-Large | 99.05 | 96.09 | 96.83 | 74.69 | 99.22 | 96.64 | 97.37 |