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Table 1 Comparison of M-DeepAssembly with other methods on 164 multi-domain proteins.

From: M-DeepAssembly: enhanced DeepAssembly based on multi-objective multi-domain protein conformation sampling

Method

TM-score

RMSD (Ã…)

top1

best

top1

best

AlphaFold2

0.610

–

13.590 Å

–

AlphaFold3

0.645

–

13.444 Å

–

DeepAssembly

0.690

–

11.019 Å

–

M-DeepAssembly

0.704

0.734

10.419 Å

8.774 Å

  1. top1 in the table represents the top-ranking models, and best represents the best model in the ensembles. The results of AlphaFold3 were predicted using the official server.
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BMC Bioinformatics

ISSN: 1471-2105

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