Table 4 Comparison of time distribution for different strategies in the CPU + Accelerators framework
From: Fast noisy long read alignment with multi-level parallelism
Strategy | Datasets | Host | Device | Comm. |
|---|---|---|---|---|
(min) | (min) | (min) | ||
NESD-s | E. coli-sim | 0.18 | 0.03 | 0.16 |
S. cerevisiae-sim | 0.46 | 0.07 | 0.38 | |
D. melanogaster-sim | 4.85 | 0.75 | 4.28 | |
A. thaliana-sim | 4.58 | 0.71 | 3.71 | |
H. sapiens-sim | 19.77 | 4.26 | 15.50 | |
H. sapiens-real | 5.77 | 1.07 | 5.49 | |
D. melanogaster-real | 22.39 | 4.09 | 18.20 | |
NESD-l | E. coli-sim | 0.32 | 0.22 | 0.34 |
S. cerevisiae-sim | 0.80 | 0.54 | 0.88 | |
D. melanogaster-sim | 8.51 | 5.76 | 9.54 | |
A. thaliana-sim | 7.88 | 5.32 | 8.72 | |
H. sapiens-sim | 34.95 | 23.82 | 61.10 | |
H. sapiens-real | 10.04 | 6.37 | 12.26 | |
D. melanogaster-real | 50.77 | 34.50 | 56.09 |