Table 3 Comparison of timing for original DP formula, SSE acceleration, and CPU + Accelerators framework acceleration. \(^{1}\)
From: Fast noisy long read alignment with multi-level parallelism
# | Datasets | Alignment | Origin | SSE | CPU+GPU |
|---|---|---|---|---|---|
Size | (min) | (min) | (min) | ||
1 | E. coli-sim | 628 | 40.12 | 10.03 | 7.88 |
2 | S. cerevisiae-sim | 1569 | 138.32 | 34.09 | 26.30 |
3 | D. melanogaster-sim | 10M | 640.21 | 163.17 | 125.38 |
4 | A. thaliana-sim | 10M | 688.26 | 171.56 | 132.55 |
5 | H. sapiens-sim | 10M | 681.53 | 174.07 | 129.78 |
6 | H. sapiens-real | 10M | 503.05 | 118.59 | 93.30 |
7 | D. melanogaster-real | 10M | 659.97 | 166.57 | 125.02 |
8 | PacBio CLR | 10M | 839.13 | 202.20 | 126.54 |
9 | PacBio HiFi | 10M | 2029.06 | 509.82 | 202.20 |
10 | ONT | 10M | 2207.17 | 550.42 | 283.76 |