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Table 2 Prediction performance of HPOseq with different E-values

From: HPOseq: a deep ensemble model for predicting the protein-phenotype relationships based on protein sequences

Threshold

1

0.1

0.01

0.001

0.0001

0.00001

0

AUPR

0.2953

0.3119

0.3244

0.3011

0.2876

0.2884

0.2678

\(F_{max}\)

0.3256

0.3571

0.3869

0.3473

0.3025

0.3113

0.2988

  1. Bold indicates the optimal results for constructing the model under the protein similarity network using different thresholds
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BMC Bioinformatics

ISSN: 1471-2105

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