Table 11 Summary of external datasets used for biomarker validation across omics types and BRCA and KIPAN cancer subtypes
Dataset | Omic type | Sample count per subtype | Tested biomarkers | p value |
|---|---|---|---|---|
GSE1992 | mRNA | LumA(34), LumB(19), HER(12), Basal(14), Normal(5) | RAET1L | 3.9045e-02 |
GSE19783 | miRNA | LumA(41), LumB(12), HER (17), Basal (15), Normal(10) | miR-934 | 3.1204e-05 |
GSE70567 | DNA Methy. | LumA(41), LumB (30), HER (32), Basal(44), Normal (11) | MIR563 | 2.9372e-05 |
GSE20685 | mRNA | LumA(71), LumB(52), HER(51), Basal(31), Normal(39) | GATA3 | 6.2580e-60 |
FOXC1 | 8.6821e-54 | |||
TBC1D9 | 1.3633e-45 | |||
ESR1 | 1.0325e-03 | |||
C6orf97 | 5.2774e-49 | |||
FOXA1 | 6.3436e-74 | |||
AGR3 | 2.9687e-59 | |||
GSE15641 | mRNA | KIRP(11), KIRC(32), KICH(6) | TSPAN5 | 2.0067e-08 |
MTUS1 | 1.7907e-05 | |||
PLVAP | 2.7228e-06 | |||
VEGFA | 5.5400e-07 | |||
PRDM16 | 7.9022e-03 | |||
GSE48008 | miRNA | KIRP(4), KIRC(5), KICH(27) | miR-122 | 9.8094e-01 |
miR-126 | 3.9823e-01 |