Table 2 Hyperparameter search for node2vec
From: Uncovering latent biological function associations through gene set embeddings
Parameter | Values tested |
|---|---|
Embedding dimensions | 32, 64 |
Walk length | 10, 20, 30 |
Return parameter (p) | 0.25, 0.5, 1, 2, 4 |
In–out parameter (q) | 0.25, 0.5, 1, 2, 4 |
Context size | 10, 20 |
Negative samples | 1, 5, 10 |
Number of walks per node | 10, 20, 30 |