Fig. 8
From: Multi-proteins similarity-based sampling to select representative genomes from large databases
Phylogenetic distribution of MPS-representatives for Lactobacillaceae and Bacillaceae. Comparison of sampling for two taxonomic families (Lactobacillaceae and Bacillaceae) by the three methods (MPS-sampling, Treemmer and TaxSampler). The samples are mapped onto reference phylogenies comprising 6,410 genomes (Lactobacillaceae) and 7,113 genomes (Bacillaceae). Each circle represents a sample. Representative genomes are indicated by squares. A: Lactobacillaceae - Mapping of the MPS-Sampling, Treemmer, and TaxSampler samples on the phylogeny of the 6,410 genomes of Lactobacillaceae contained in the bacterial dataset. A1 - MPS-Sampling: Mapping of the 80, 44, 24 and 12 representative genomes of Lactobacillaceae when Δ ∈ {0.7; 0.6; 0.5; 0.4}. A2 - Treemmer: Mapping of the 429, 276, 188 and 124 genomes of Lactobacillaceae present in the Treemmer samples of equivalent size to those obtained with MPS-Sampling when Δ ∈ {0.7; 0.6; 0.5; 0.4}. A3 - TaxSampler: Mapping of the representatives of the 394 species and the 33 genera of Lactobacillaceae selected by TaxSampler. B - Bacillaceae: Mapping of the MPS-Sampling, Treemmer, and TaxSampler samples on the phylogeny of the 7,113 genomes of Bacillaceae contained in the bacterial dataset. B1 - MPS-Sampling: Mapping of the 247, 142, 74 and 38 representative genomes of Bacillaceae when Δ ∈ {0.7; 0.6; 0.5; 0.4}. B2 - Treemmer: Mapping of the 405, 264, 186 and 114 genomes of Bacillaceae present in the Treemmer samples of equivalent size to those obtained with MPS-Sampling when Δ ∈ {0.7; 0.6; 0.5; 0.4}. B3 TaxSampler: Mapping of the representatives of the 693 species and the 108 genera of Bacillaceae selected by TaxSampler