Fig. 3
From: Combining single-cell ATAC and RNA sequencing for supervised cell annotation
Embedding and classifier-dependent effects of ATAC on annotation quality. Boxes indicate the median, lower and upper quartile over 10 bootstrap out-of-bag test samples for macro F1 scores. Whiskers indicate 1.5 times the interquartile range and dots indicate outliers beyond the whiskers. Wilcoxon-signed rank test with Bonferroni correction was used to compare RNA-alone to RNA and ATAC models (* = p < 0.05). Abbreviations: LR = Logistic Regression, RF = Random Forest, SVC = SVM Classifier, PCA = Principal Component Analysis, scVI = single-cell Variational Inference autoencoder