Table 7 < variant>_report.csv example
From: GRAMEP: an alignment-free method based on the maximum entropy principle for identifying SNPs
Sequence id | Annotation name | Start | End | Type | Modification localization in reference | Reference kmer | Exclusive variant kmer | Reference snp | Variant snp |
|---|---|---|---|---|---|---|---|---|---|
AY-3_5105 | ORF7a | 27394 | 27759 | gene | 27752 | AAAAGAAAGACAGAA | AAAAGAAAGATAGAA | C | T |
AY-3_5105 | S | 21563 | 25384 | gene | 22917 | ACCTGTATAGATTGT | ACCGGTATAGATTGT | T | G |
AY-3_5105 | ORF1ab | 266 | 21555 | gene | 3037 | GTATTGTTCTTTCTA | GTATTGTTCTTTTTA | C | T |
AY-3_5105 | ORF1ab | 266 | 21555 | gene | 14408 | CCCACCTACAAGTTT | CCCACTTACAAGTTT | C | T |
AY-3_5105 | N | 28274 | 29533 | gene | 28881 | AGGGGAACTTCTCCT | ATGGGAACTTCTCCT | G | T |
AY-3_5105 | N | 28274 | 29533 | gene | 28916 | CAATGGCGGTGATGC | CAATGGCTGTGATGC | G | T |
AY-3_5105 | ORF1ab | 266 | 21555 | gene | 14408 | TTCCCACCTACAAGT | TTCCCACTTACAAGT | C | T |