Table 1 External tools utilized by CompàreGenome

Anaconda

4.14.0 [35]

Tool's installation

Biopython

1.82 [19]

Processing input fasta and gbk files

BLAST + 

2.15.0 [16]

Gene sequence alignment

R packages

factoextra

1.0.7 [22]

PCA analysis

ggtree

3.10.0 [23]

Visualization of Euclidean distance analysis

agricolae

1.3_7 [36]

General file editing

SeqinR

4.2_36 [20]

Fasta files editing

gplots

3.1.3 [21]

Data visualization

phangorn

2.11.1 [24]

Visualization of Euclidean distance analysis

ggrepel

0.9.4 [37]

Visualization of PCA analysis data

cowplot

1.1.2 [25]

Visualization of PCA analysis data

GO.db

3.12.1 [26]

GO enrichment analysis