CamITree: a streamlined software for phylogenetic analysis of viral and mitochondrial genomes

BMC Bioinformatics

Table 2 Comparison of CamlTree with other software programs

	CamlTree	PhyloSuite	Concatenator	MitoPhAST	TREEasy	LMAP_S	EPoS	Armadillo	MEGA
Available for Windows OS	√	√	√	×	×	×	×	√	√
Available for Mac OS	×	√	√	√	×	×	√	√	√
Available for Linux	×	√	×	√	√	√	√	×	√
Graphical interface	√	√	√	√	×	×	√	√	√
Main Programming language	TypeScript	Python	Python	Perl	Python	Perl	C + +	NA	C + +
Modify parameter	√	√	×	√	√	√	NA	√	NA
Analysis Strategy selection	√	NA	×	NA	√	√	×	×	√
Sequence alignment	√	√	√	√	√	√	√	√	√
Alignment selection	√	√	×	√	×	√	NA	√	×
Batch processing	√	√	√	√	√	√	×	×	×
Maximum likelihood tree	√	√	NA	√	√	√	√	√	√
Bayesian tree	√	√	NA	×	×	×	√	√	×
Workflow	√	√	√	√	√	√	√	√	√
Free	√	√	√	√	√	√	√	√	√
Alignment tools	MAFFT, MACSE	MAFFT, MACSE	MAFFT	MAFFT, HMMER	MAFFT	Clustal Omega, ClustalW, Dialign-tx, FSA, GramAlign, Kalign, MACSE, MAFFT, MUSCLE, Opal, Prank, ProbAlign, ProbCons, T-COFFEE	NA	ClusterW2	NA
Tree estimation tools	IQ-TREE2, MrBayes	IQ-TREE2, MrBayes	IQ-TREE	IQ-TREE	IQ-TREE, RaxML-NG	IQ-TREE, MPBoot, Ninja, SMS, Degen, RYcode	NA	NA	NA

ISSN: 1471-2105