Table 1 Performances of various protein selection methods for DIP
Methods | Tensor | multi-level | edge-betweenness | |||
|---|---|---|---|---|---|---|
Order | 2nd | 3rd | 1st | 2nd | 1st | 2nd |
# of proteins | 195 | 55 | 144 | 138 | 39 | 82 |
# of genes | 193 | 57 | 128 | 164 | 30 | 111 |
Jensen Diseases | \(\bigcirc\) | \(\bigcirc\) | \(\bigcirc\) | \(\bigcirc\) | 7 | 5 |
OMIM Disease | 9 | 9 | 8 | 0 | 0 | 0 |
LINCS L1000 Chem Pert Consensus Sigs | \(\bigcirc\) | 0 | 4 | 1 | 0 | \(\bigcirc\) |
DSigDB | \(\bigcirc\) | \(\bigcirc\) | \(\bigcirc\) | \(\bigcirc\) | 0 | \(\bigcirc\) |
DrugMatrix | 6 | 0 | 0 | 0 | 0 | 0 |
Drug Perturbations from GEO down | \(\bigcirc\) | \(\bigcirc\) | 0 | 0 | 0 | 2 |
Drug Perturbations from GEO up | \(\bigcirc\) | \(\bigcirc\) | 6 | 0 | 1 | 0 |