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Table 1 Summary of the tested 10 models, including the neural network architecture, input data, and the applied optimizations

From: Optimizing sequence data analysis using convolution neural network for the prediction of CNV bait positions

Model

Model Architecture

Hyper-parameter optimizations

Input data

1

Conv1D

batch normalization, causal padding, reverse weight

COV, SEQ, ONTARGET

2

Dense

batch normalization, reverse weight

COV, SEQ, ONTARGET

3

Conv1D

causal padding, reverse weight

COV, SEQ, ONTARGET

4

Dense

reverse weight

COV, SEQ, ONTARGET

5

Conv1D

batch normalization, causal padding

COV, SEQ, ONTARGET

6

Conv1D

batch normalization, reverse weight, valid padding

COV, SEQ, ONTARGET

7

Conv1D

batch normalization, reverse weight, same padding

COV, SEQ, ONTARGET

8

Conv1D

batch normalization, causal padding, reverse weight

COV, SEQ

9

Conv1D

batch normalization, causal padding, reverse weight

COV, ONTARGET

10

Conv1D

batch normalization, causal padding, reverse weight

SEQ, ONTARGET