Pheno-Ranker: a toolkit for comparison of phenotypic data stored in GA4GH standards and beyond

BMC Bioinformatics

Table 2 Descriptors from the comparison between a given simulated patient and a cohort of 1000 individuals with 3 phenotypicFeatures, 3 diseases and 3 treatments from pools of 5. The patient was created with the same conditions. Table results can be reproduced by using the commands at [76]

Reference(ID)	Length	Hamming-distance	Distance-Z-score	Distance-P-value	Distance-Z-score(RAND)	Jaccard-index	Jaccard-Z-score	Jaccard-P-value
Beacon_121	9	0	− 3.381	0.0003608	− 3.0000	1.000	4.442	0.0002886
Beacon_49	9	0	− 3.381	0.0003608	− 3.0000	1.000	4.442	0.0002886
Beacon_821	10	2	− 2.433	0.0074969	− 1.8974	0.800	2.847	0.0323852
Beacon_56	10	2	− 2.433	0.0074969	− 1.8974	0.800	2.847	0.0323852
Beacon_666	10	2	− 2.433	0.0074969	− 1.8974	0.800	2.847	0.0323852
Beacon_74	10	2	− 2.433	0.0074969	− 1.8974	0.800	2.847	0.0323852
Beacon_829	10	2	− 2.433	0.0074969	− 1.8974	0.800	2.847	0.0323852
Beacon_343	10	2	− 2.433	0.0074969	− 1.8974	0.800	2.847	0.0323852
Beacon_337	10	2	− 2.433	0.0074969	− 1.8974	0.800	2.847	0.0323852
Beacon_365	10	2	− 2.433	0.0074969	− 1.8974	0.800	2.847	0.0323852

ISSN: 1471-2105