Table 2 ARPIP performance in simulation. All metrics include the root sequences and have been computed for each sample individually. We report the averages over the samples
From: Single-character insertion–deletion model preserves long indels in ancestral sequence reconstruction
Metric | Consistency (%) |
|---|---|
Proportion of correctly inferred ancestral characters | \(97.88 \pm 2.01\) |
Proportion of correctly inferred ancestral columns | \(90.35 \pm 2.01\) |
Proportion of correctly inferred ancestral amino acids (i.e., excluding gaps) | \(97.75 \pm 2.55\) |
Gap precision | \(94.27 \pm 5.37\) |
Gap recall (sensitivity) | \(96.99 \pm 3.97\) |
Gap F-score | \(95.46 \pm 3.37\) |
Gap specificity | \(99.29 \pm 1.17\) |