Table 1 Summary statistics of gaps and indels on mammalian data
From: Single-character insertion–deletion model preserves long indels in ancestral sequence reconstruction
Lineage/Clade | Gap characters | Average gap length | Total # of gaps | % gap characters | Average branch length | Ins | Del | Ins-Del bias |
|---|---|---|---|---|---|---|---|---|
Human | \(103'189\) | 11.5 | \(11'252\) | 4.01 | 0.004 | \(4'900\) | \(4'708\) | 1.04 |
Chimp | \(130'673\) | 11.5 | \(11'546\) | 5.14 | 0.006 | \(8'647\) | \(35'939\) | 0.24 |
Homo-Pan | ||||||||
(Human, Chimp) | \(103'381\) | 11.5 | \(11'237\) | 4.02 | 0.002 | \(1'411\) | \(2'645\) | 0.53 |
Gorilla | \(137'499\) | 15.2 | \(10'937\) | 5.42 | 0.014 | 25’353 | 60’705 | 0.42 |
Homininae | ||||||||
(Human, Chimp, Gorilla) | \(102'147\) | 11.5 | \(11'285\) | 3.97 | 0.015 | \(5'976\) | \(1'761\) | 3.39 |
Macaque | \(144'537\) | 18.2 | \(11'613\) | 6.8 | 0.021 | \(8'855\) | \(47'030\) | 0.19 |
Catarrhini | ||||||||
(Human, Chimp, Gorilla, Macaque) | \(106'362\) | 11.5 | \(11'545\) | 4.14 | 0.109 | \(33'191\) | \(16'062\) | 2.07 |
Mouse | \(121'087\) | 7.1 | \(14'417\) | 4.74 | 0.041 | \(10'664\) | \(10'025\) | 1.06 |
Rat | 149’525 | 7.4 | 14’802 | 5.92 | 0.045 | \(17'191\) | \(44'990\) | 0.38 |
Murinae | ||||||||
(Mouse, Rat) | \(121'726\) | 7.4 | \(14'703\) | 4.77 | 0.092 | \(7'303\) | \(5'538\) | 1.32 |