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Table 3 Rare CNV frequency distribution binning by size in cases vs. controls

From: Rare copy number variant analysis in case–control studies using snp array data: a scalable and automated data analysis pipeline

Deletions

Length

Cases

Controls

Cases_freq

Controls_freq

P.value

OR

X95.CI

P

50KB_100KB

435

1298

0.3680

0.3407

0.0911

1.1270

0.9837,1.2909

0.0846

100KB_200KB

260

919

0.2200

0.2412

0.1435

0.8871

0.7586,1.0372

0.1331

200KB_500KB

102

323

0.0863

0.0848

0.9174

1.0196

0.8078,1.2869

0.8703

500KB_1000KB

17

65

0.0144

0.0171

0.6158

0.8407

0.4909,1.4397

0.5269

1000KB_1000000KB

13

10

0.0110

0.0026

0.0005

4.2258

1.8481,9.6622

0.0002

Duplications

Length

Cases

Controls

Cases_freq

Controls_freq

P.value

OR

X95.CI

P

50KB_100KB

297

1050

0.2513

0.2756

0.1078

0.8821

0.7597,1.0242

0.0998

100KB_200KB

204

614

0.1726

0.1612

0.3773

1.0857

0.9125,1.2918

0.3536

200KB_500KB

157

488

0.1328

0.1281

0.7077

1.0427

0.8596,1.2646

0.6712

500KB_1000KB

48

150

0.0406

0.0394

0.9161

1.0328

0.7411,1.4391

0.8488

1000KB_1000000KB

15

65

0.0127

0.0171

0.3614

0.7406

0.4207,1.3033

0.2960

  1. The table shows data directly extracted from a summary text file. The table format can be adjusted by the user. Length: CNV length interval, Cases/Controls: number of CNVs (deletions or duplications) in each cohort. Cases_freq/Controls_freq: CNVs frequencies, P.value: two proportion test p-value, OR: odds ratio, X95.C: confidence interval at 95%, P: odds ratio p-value associate
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BMC Bioinformatics

ISSN: 1471-2105

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