Table 1 Number of Salmonella-detected at each spike-in level in 10-million read libraries
From: Managing false positives during detection of pathogen sequences in shotgun metagenomics datasets
Salmonella reads | Â | Positive libraries: | Positive libraries: |
|---|---|---|---|
in library | Replicates | Kraken2+SSRs | Metaphlan4 |
\(1 \times 10^{5}\) | 20 | 20 | 20 |
\(1 \times 10^{4}\) | 20 | 20 | 20 |
\(1 \times 10^{3}\) | 20 | 20 | 4 |
\(1 \times 10^{2}\) | 20 | 20 | 0 |
50 | 20 | 16 | 0 |
10 | 20 | 13 | 0 |
5 | 20 | 12 | 0 |
0 | 20 | 0 | 0 |