Fig. 1
From: DiscovEpi: automated whole proteome MHC-I-epitope prediction and visualization
DiscovEpi schematic workflow and output. Workflow of DiscovEpi: A the protein sequence retrieval to generate the dataset; B the prediction parameters encompassing HLA allele, peptide length and NetMHCpan-score threshold; and C the parameters for visualization parameters of the predicted epitopes with the maximum number of top scoring proteins and the maximum protein length to be depicted. The resulting heat map (D) is generated with the parameters shown in A–C where each bar marks the presence of one or multiple overlapping putative epitopes and the intensity indicates the epitope score. The length of the protein is visualized through the light grey background. The proteins are ordered by their epitope density