Table 2 Mitochondrially-encoded and ribosomal protein gene communities identified following unsupervised clustering of each of the four cell clusters, 1.1, 1.2, 2 and 3
From: Leveraging gene correlations in single cell transcriptomic data
Cell cluster | Community | Number of genes | Gene names |
|---|---|---|---|
1.1 | Mitochondrially-encoded | 110 | AKAP9, ANKRD37, ARGLU1, ATP1A1, BHLHE40, C21orf58, CD109, CDK5RAP3, CIR1, COPB1, CTSC, DDIT4, DDX17, DDX5, DMTF1, DNAJB1, DST, EIF2A, EIF3D, EIF4A2, EIF4G1, EMP1, EPRS, EWSR1, FAM168A, FNBP4, FUS, GAS5, GOLGA8B, GPNMB, GRN, HERC5, HSP90AB1, HSPA9, HSPD1, IFIT1, IFIT2, IFIT3, IGF2R, ING2, IRF1, ISG15, IVNS1ABP, LAMB1, LGALS3BP, LYST, MACF1, MAN2C1, MCM6, MT-ATP6, MT-ATP8, MT-CO1, MT-CO2, MT-CO3, MT-CYB, MT-ND1, MT-ND2, MT-ND3, MT-ND4, MT-ND4L, MT-ND5, MT-ND6, MT-RNR1, MT-TD, MT-TF, MT-TL1, MT-TP, MT-TS2, MT-TV, MXI1, MYC, MYO10, NCOA3, NDUFB9, P4HA1, P4HB, PABPC1L, PDIA3, PDIA6, PMAIP1, PMEL, PNISR, PON2, PPFIA1, PRKDC, PSAP, PTPRM, RASGRP3, RGS1, RRBP1, SAT1, SEC31A, SERINC1, SF3B1, SLC1A3, SLC2A3, SLC35F6, SLC3A2, SNHG12, SORBS2, SPEN, SPTBN1, SRRM2, TAF1D, TLN1, TSR1, TYR, UBR5, VIM, ZFAS1 |
1.2 | Mitochondrially-encoded | 59 | AC021451.1, ADCY1, AKAP9, BPTF, CALD1, CAPN2, CBLB, COX6A1, CSDE1, DDX17, DDX3X, DST, DZIP3, FCHSD2, FOS, GOLGB1, HECTD1, IGF1R, IGFBP5, JUNB, KRIT1, LRPPRC, MEF2A, MT-ATP6, MT-ATP8, MT-CO1, MT-CO2, MT-CO3, MT-CYB, MT-ND1, MT-ND2, MT-ND3, MT-ND4, MT-ND4L, MT-ND5, MT-RNR1, MT-RNR2, MT-TF, MT-TL1, MT-TP, MT-TS2, MT-TT, MT-TV, MXI1, MYCBP2, NBR1, PCLO, PLCB4, PPP1R9A, SPEN, SRRM2, TBL1XR1, TDRD3, TIA1, ZBTB38, ZC3H13, ZKSCAN1, ZMYND8, ZNF704 |
2 | Mitochondrially-encoded | 50 | APOD, APP, ATP6AP1, BSG, CD109, COX6A1, CPVL, CTSA, CTSD, CTSK, GPNMB, GRN, GUSB, IGSF8, LGALS3BP, LRPAP1, MAGED2, MCUR1, MGST3, MT-ATP6, MT-ATP8, MT-CO1, MT-CO2, MT-CO3, MT-CYB, MT-ND1, MT-ND2, MT-ND3, MT-ND4, MT-ND4L, MT-RNR1, MT-RNR2, MT-TF, MT-TL1, MT-TP, MT-TS2, MT-TT, MT-TV, NCSTN, NDUFB9, P4HB, PCNXL2, PLAT, PLTP, PMEL, PSAP, RPN2, SPARC, SRPX, TYR |
3 | Mitochondrially-encoded | 15 | COX6A1, GPNMB, MT-ATP6, MT-ATP8, MT-CO2, MT-CO3, MT-CYB, MT-ND1, MT-ND2, MT-ND3, MT-ND4, MT-ND4L, MT-ND5, MT-TL1, PMEL |
1.1 | Ribosomal protein genes | 48 | FTH1, RPL10, RPL11, RPL12, RPL13, RPL13A, RPL18, RPL19, RPL24, RPL26, RPL27, RPL27A, RPL28, RPL30, RPL31, RPL34, RPL35, RPL37, RPL37A, RPL38, RPL8, RPLP0, RPLP1, RPLP2, RPS11, RPS12, RPS13, RPS14, RPS15, RPS15A, RPS16, RPS17, RPS18, RPS19, RPS2, RPS20, RPS21, RPS23, RPS27, RPS27A, RPS29, RPS3, RPS5, RPS6, RPS8, SNHG5, TPT1, UBA52 |
1.2 | Ribosomal protein genes | 158 | ABHD14B, APP, ARL2, ATP5G2, C14orf2, C4orf48, C7orf55, CCDC86, CCDC88C, CD109, CEP350, COMMD6, COX5B, COX7A2L, CST3, CUEDC2, DCBLD2, EEF1A1, EEF1B2, EEF1D, EEF2, EIF3E, EIF3F, EIF3H, EIF3K, ETV5, FAU, FBXO32, FIBP, FTH1, FTL, GLTSCR2, GNB2L1, HIF1A, HLTF, IFITM3, IMPDH2, ITSN2, LRRC75A, LRRC75A-AS1, METTL12, MIA, MME, MT-ND6, NAA38, NACA, NACA2, NAP1L1, NDUFB7, NDUFS4, NHP2, NIN, OAZ1, OST4, PABPC1, PABPC3, PGLS, PPFIA1, PRDX5, PRKCSH, PRSS23, RB1CC1, ROMO1, RP11-193E15.4, RP11-356J5.12, RP11-669N7.2, RPL10, RPL10A, RPL11, RPL12, RPL13, RPL13A, RPL14, RPL15, RPL18, RPL18A, RPL19, RPL22, RPL23, RPL23A, RPL24, RPL26, RPL27, RPL27A, RPL28, RPL29, RPL3, RPL30, RPL31, RPL32, RPL34, RPL35, RPL35A, RPL36, RPL36AL, RPL37, RPL37A, RPL38, RPL39, RPL4, RPL5, RPL6, RPL7A, RPL8, RPL9, RPLP0, RPLP1, RPLP2, RPS10, RPS11, RPS12, RPS13, RPS14, RPS15, RPS15A, RPS16, RPS17, RPS18, RPS19, RPS2, RPS20, RPS21, RPS23, RPS24, RPS25, RPS27, RPS27A, RPS28, RPS29, RPS3, RPS3A, RPS4X, RPS5, RPS6, RPS7, RPS8, RPS9, RPSA, SAT2, SEC11A, SERF2, SF3B6, SH3KBP1, SNHG19, SNHG5, SNHG6, SSR4, SUCLG2, TOMM7, TPT1, TSPO, UBA52, UBL5, UQCRB, UQCRH, UQCRHL, VPS28, WNK1 |
2 | Ribosomal protein genes | 440 | ACTB, ACTG1, AKR1B1, ALDOA, ANAPC13, ANP32A, ANP32B, ANXA5, AP2S1, APOA1BP, APRT, ARL6IP5, ARPC1A, ARPC1B, ARPC2, ARPC3, ATOX1, ATP5B, ATP5E, ATP5EP2, ATP5F1, ATP5G1, ATP5G2, ATP5G3, ATP5I, ATP5J, ATP5J2, ATP5L, ATP5O, ATP6V0B, ATP6V1F, ATP6V1G1, ATPIF1, BCAS3, BCCIP, BOLA3, BTF3, BUD31, C11orf31, C12orf57, C14orf2, C17orf89, C19orf10, C19orf53, C1QBP, C20orf27, C8orf33, CACYBP, CALM1, CALM2, CAPG, CAPZB, CBX1, CBX3, CCNI, CCT7, CD59, CD63, CDC42, CDKN2A, CETN2, CFL1, CHCHD2, CHCHD6, CHCHD7, CHMP2A, CHMP4B, CKS2, CNBP, CNIH1, COA4, COX14, COX17, COX4I1, COX5A, COX5B, COX6B1, COX6C, COX7A2, COX7B, COX7C, COX8A, CST3, CSTB, CTHRC1, CTSH, CWC15, CYC1, CYCS, CYTL1, DBI, DDOST, DGUOK, DNAJB1, DNAJC8, DRG1, DSTN, DTD1, DUT, DYNLL1, DYNLRB1, ECHS1, EDF1, EEF1A1, EEF1B2, EEF1D, EIF1, EIF2S2, EIF3H, EIF3I, EIF4EBP1, EIF5A, EMC4, ENO1, ENY2, ERH, ESD, FAU, FBL, FIS1, FKBP1A, FKBP2, FTH1, FTL, FXYD5, GADD45GIP1, GAPDH, GHITM, GLO1, GMNN, GNAS, GNB2L1, GNG12, GPX1, GPX4, GSTO1, GSTP1, GUK1, GYPC, H2AFZ, H3F3B, HDDC2, HINT1, HIST1H4C, HMGB1, HMGN2, HNRNPC, HSBP1, HSPB1, HSPE1, INSIG1, ITGB1BP1, LAGE3, LAMTOR1, LAMTOR4, LAMTOR5, LAPTM4B, LDHA, LDHB, LGALS1, LGALS3, LINC00998, LRRC75A, LRRC75A-AS1, LSM4, LSM7, METTL9, MIA, MIF, MKKS, MLANA, MMADHC, MRPL12, MRPL13, MRPL21, MRPL33, MRPL48, MRPL51, MRPL57, MRPS33, MRPS34, MRPS6, MT2A, MTPN, MYEOV2, MYL6, MZT2B, NAA38, NACA, NAP1L1, NDUFA1, NDUFA12, NDUFA13, NDUFA4, NDUFA5, NDUFA8, NDUFAB1, NDUFB1, NDUFB10, NDUFB11, NDUFB2, NDUFB3, NDUFB4, NDUFC1, NDUFC2, NDUFS5, NDUFS6, NEDD8, NGFRAP1, NHP2, NHP2L1, NME1, NME4, NOL7, NPC2, NPM1, NSA2, NUDT1, NUTF2, OAZ1, OLA1, OST4, OSTC, PA2G4, PABPC1, PABPC3, PARK7, PDAP1, PDCD5, PEBP1, PFDN2, PFDN4, PFDN5, PFN1, PHB, PHB2, PKM, PMP22, POLR2F, POLR2J, POLR2L, POMP, PPDPF, PPIA, PPIB, PPT1, PRDX1, PRDX5, PRDX6, PRELID1, PSMA5, PSMA7, PSMB4, PSMB6, PSMB7, PSME1, PSMG1, PTMA, PTTG1IP, PYURF, RAB2A, RAB38, RAB7A, RAN, RBX1, REXO2, RGS10, RHOA, ROMO1, RP11-669N7.2, RP11-831H9.11, RPL10, RPL10A, RPL11, RPL12, RPL13, RPL13A, RPL14, RPL15, RPL18, RPL19, RPL22, RPL23, RPL23A, RPL24, RPL26, RPL27, RPL27A, RPL28, RPL29, RPL3, RPL30, RPL31, RPL32, RPL34, RPL35, RPL35A, RPL36, RPL36AL, RPL37, RPL37A, RPL38, RPL39, RPL4, RPL5, RPL6, RPL7A, RPL8, RPL9, RPLP0, RPLP1, RPLP2, RPS10, RPS11, RPS12, RPS13, RPS14, RPS15, RPS15A, RPS16, RPS17, RPS18, RPS19, RPS19BP1, RPS2, RPS20, RPS21, RPS23, RPS24, RPS25, RPS27, RPS27A, RPS27L, RPS28, RPS29, RPS3, RPS4X, RPS5, RPS6, RPS7, RPS8, RPS9, RPSA, RSL1D1, RSL24D1, RTFDC1, S100A1, S100A10, S100A11, S100A13, S100A6, S100B, SCAND1, SEC11A, SEC61G, SEP15, SERF2, SERP1, SET, SF3B6, SH3BGRL, SH3BGRL3, SHFM1, SKP1, SLC25A3, SLC25A5, SLIRP, SLMO2, SMS, SNHG5, SNHG6, SNHG8, SNRPC, SNRPD1, SNRPD2, SNRPD3, SNRPE, SNRPF, SNRPG, SOD1, SPCS1, SRP14, SRP72, SRSF3, SSBP1, SSR3, SSR4, ST13, STMN1, SUB1, SUMO2, SUMO3, TBCA, TCEA1, TCEAL8, TCEB1, TCEB2, THOC7, TIMP1, TMA7, TMBIM6, TMED2, TMEM14A, TMEM14B, TMEM14C, TMSB10, TMSB4X, TOMM20, TOMM6, TOMM7, TPD52, TPI1, TPT1, TRAPPC1, TSPAN3, TUBA1B, TXN, TXN2, TXNDC17, UBA52, UBB, UBE2L3, UBE2N, UBL5, UBXN1, UQCC2, UQCR10, UQCRB, UQCRH, UQCRQ, USMG5, UTP11L, UXT, VDAC1, VIM, YBX1, YWHAE, YWHAZ, ZNF706, ZNHIT1 |
3 | Ribosomal protein genes | 63 | ACTG1, ATOX1, CD63, CHCHD2, COX7C, FAU, FTH1, FTL, H2AFZ, HSPE1, LGALS3, MLANA, PRDX1, PSMA7, RPL10, RPL11, RPL12, RPL13, RPL13A, RPL15, RPL18, RPL19, RPL23, RPL24, RPL26, RPL27, RPL27A, RPL28, RPL31, RPL32, RPL34, RPL35, RPL35A, RPL37, RPL37A, RPL38, RPL5, RPL8, RPLP0, RPLP2, RPS11, RPS12, RPS13, RPS14, RPS15, RPS15A, RPS18, RPS2, RPS20, RPS23, RPS24, RPS25, RPS27A, RPS29, RPS3, RPS4X, RPS6, RPS8, TMSB10, TPI1, TPT1, UBA52, UQCRB |