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Table 2 Comparison of our method, sub-model of SPOT-Contact-LM, and ESM-1b on SPOT-2018 set for medium-, long- contacts

From: PCP-GC-LM: single-sequence-based protein contact prediction using dual graph convolutional neural network and convolutional neural network

Model

Medium-range

Long-range

L/10

L/5

L/2

L/1

L/10

L/5

L/2

L/1

SPOT-Contact-1

39.17

31.84

21.75

14.84

35.14

30.34

22.75

17.02

SPOT-Contact-2

40.03

32.83

22.49

15.26

36.03

30.92

23.75

18.13

SPOT-Contact-3

42.03

34.38

23.32

15.65

38.75

33.23

25.22

18.94

SPOT-Contact-4

38.52

31.53

21.86

14.85

35.32

30.19

22.80

17.20

SPOT-Contact-5

40.16

32.85

22.13

14.93

37.34

31.82

23.87

17.77

SPOT-Contact-6

40.52

33.37

22.59

15.33

37.43

32.22

24.31

18.44

SPOT-Contact-LM

42.43

34.41

23.63

15.88

39.60

34.35

25.94

19.62

PCP-GC-LM

44.44

35.05

25.08

15.68

38.09

33.04

25.63

18.98

  1. Bold values denote the most outstanding performing values for that category within the table
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BMC Bioinformatics

ISSN: 1471-2105

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