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Table 2 Comparison of time efficiency data between refMLST, chewBBACA and chewieSnake for S. Enterica, Y. Enterocolitica, and C. Jejuni on a Linux machine with 100 GB of RAM and 10 CPUs

From: refMLST: reference-based multilocus sequence typing enables universal bacterial typing

 

refMLST

chewBBACA

chewieSnake

Number of processed genomes

S. enterica

0.98 h*

NA

23.55 h*

1263

Y. enterocolitica

0.22 h

2.72 h

46.8 h

331

C. jejuni

6.23 h

9.49 h

166.5 h

6526

  1. *The analysis was performed using an r6i.2xl EC2 instance with 8 CPUs and 64 GB of RAM
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BMC Bioinformatics

ISSN: 1471-2105

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