Table 2 SmithRNAs and their targets identified under the most stringent parameter combination in males and females
From: SmithHunter: a workflow for the identification of candidate smithRNAs and their targets
Sex | SmithRNA | Target | dG PITA | dG RNAhybrid | Protein name |
|---|---|---|---|---|---|
M | clusterid0 | Locus_690 | − 17.1 | − 15.0 | Microtubule-associated protein RP/EB family member 1-like isoform X2 |
M | clusterid0 | Locus_1177 | − 12.39 | − 15.2 | Hydrocephalus-inducing protein homolog isoform X19 |
M | clusterid0 | Locus_1711 | − 13.7 | − 22.2 | Uncharacterized protein LOC123531196 isoform X12 |
M | clusterid0 | Locus_4783 | − 16.9 | − 21.4 | Integrator complex subunit 2-like |
M | clusterid0 | Locus_9761 | − 14.3 | − 16.2 | Matrix-remodeling-associated protein 7-like |
M | clusterid0 | Locus_3140 | − 14.23 | − 15.0 | Dynein axonemal heavy chain 2-like isoform X3 |
M | clusterid0 | Locus_4916 | − 21.7 | − 20.7 | Dynein heavy chain domain-containing protein 1-like |
M | clusterid0 | Locus_16697 | − 13.29 | − 16.2 | WD repeat-containing protein 1-like |
M | clusterid15 | Locus_7476 | − 23.4 | − 27.2 | Uncharacterized protein LOC123561027 |
M | clusterid15 | Locus_7478 | − 15 | − 16.5 | Hypoxia-inducible factor 1-alpha |
M | clusterid15 | Locus_3651 | − 12.9 | − 18.7 | Protein polybromo-1-like isoform X13 |
M | clusterid1 | Locus_4366 | − 26.5 | − 29.4 | Cytoplasmic dynein 1 heavy chain 1-like isoform X6 |
M | clusterid3 | Locus_1455 | − 22.6 | − 20.9 | Uncharacterized protein LOC123556528 |
M | clusterid3 | Locus_3369 | − 15.35 | − 17.7 | Pericentriolar material 1 protein-like isoform X5 |
M | clusterid3 | Locus_34514 | − 22.2 | − 23.6 | Uncharacterized protein LOC123532869 |
M | clusterid3 | Locus_3229 | − 23.7 | − 19.4 | MAM and LDL-receptor class A domain-containing protein 2-like |
M | clusterid7 | Locus_2534 | − 15.9 | − 17.6 | Trifunctional enzyme subunit alpha, mitochondrial-like isoform X1 |
M | clusterid7 | Locus_2153 | − 12.25 | − 16.3 | ATP-dependent translocase ABCB1-like isoform X2 |
M | clusterid7 | Locus_17431 | − 14 | − 16.1 | Putative inhibitor of apoptosis |
M | clusterid7 | Locus_1312 | − 11.9 | − 15.4 | Testis-expressed protein 45-like |
M | clusterid9 | Locus_5815 | − 17.2 | − 18.2 | U3 small nucleolar RNA-associated protein 6 homolog |
M | clusterid9 | Locus_3650 | − 19.2 | − 18.0 | Eukaryotic translation initiation factor 3 subunit I-like |
M | clusterid9 | Locus_9171 | − 16.1 | − 17.3 | Peripheral-type benzodiazepine receptor-associated protein 1-like isoform X3 |
M | clusterid9 | Locus_5848 | − 14.2 | − 15.0 | E3 ubiquitin-protein ligase rnf213-alpha-like isoform X2 |
M | clusterid9 | Locus_3816 | − 17.9 | − 17.3 | DNA-directed RNA polymerases I, II, and III subunit RPABC3-like |
F | clusterid0 | Locus_1177 | − 15.1 | − 15.2 | Hydrocephalus-inducing protein homolog isoform X19 |
F | clusterid0 | Locus_7826 | − 12.3 | − 21.3 | Zinc finger and BTB domain-containing protein 17-like isoform X1 |
F | clusterid0 | Locus_1982 | − 12.51 | − 15.1 | Uncharacterized protein LOC123551470 |
F | clusterid0 | Locus_4867 | − 15.7 | − 19.2 | Zinc finger and BTB domain-containing protein 17-like isoform X1 |
F | clusterid0 | Locus_1117 | − 9.9 | − 18.3 | Dynein axonemal heavy chain 3-like |
F | clusterid1 | Locus_472 | − 20.2 | − 19.6 | msx2-interacting protein-like isoform X2 |
F | clusterid1 | Locus_25748 | − 25.91 | − 16.9 | SH3 and multiple ankyrin repeat domains protein 2-like isoform X2 |
F | clusterid1 | Locus_2909 | − 9.5 | − 18.3 | Syntenin-1-like |
F | clusterid1 | Locus_1117 | − 18.6 | − 30.1 | Dynein axonemal heavy chain 3-like |
F | clusterid2 | Locus_15925 | − 17.16 | − 27.9 | Uncharacterized protein LOC123527919 |
F | clusterid3 | Locus_13268 | − 15.3 | − 16.4 | Transcription initiation factor TFIID subunit 1-like isoform X1 |
F | clusterid3 | Locus_1747 | − 14.1 | − 17.7 | Dynein axonemal heavy chain 6-like isoform X2 |
F | clusterid3 | Locus_6770 | − 17.9 | − 17.5 | Acetyl-CoA acetyltransferase, mitochondrial-like |
F | clusterid9 | Locus_3552 | − 26.8 | − 20.2 | Cilia- and flagella-associated protein 47-like isoform X8 |
F | clusterid9 | Locus_31245 | − 18.5 | − 23.5 | Cullin-5-like isoform X1 |
F | clusterid9 | Locus_1096 | − 25.1 | − 16.1 | Apolipophorins-like |