Table 1 The dataset used for evaluation consists of contact matrices at multiple resolutions from different cell lines and based on different approaches. We focus on the intra-chromosomal sub-contact matrices
Cell line | hic [GB] | Cooler [GB] | cooler (intra) [GB] |
|---|---|---|---|
CH12 | 8.58 | 1.90 | 0.43 |
GM12878 (Insitu-DpnII) | 6.83 | 1.37 | 0.44 |
GM12878 (Insitu-Primary) | 31.86 | 9.64 | 1.77 |
GM12878 (Insitu-Replicate) | 29.06 | 8.78 | 1.63 |
HMEC | 7.08 | 1.46 | 0.20 |
HUVEC | 8.87 | 1.92 | 0.27 |
IMR90 | 12.77 | 2.72 | 0.44 |
K562 | 12.08 | 2.61 | 0.37 |
KBM7 | 13.91 | 3.19 | 0.33 |
NHEK | 11.34 | 2.55 | 0.62 |