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Table 4 Performance comparison of Entourage, Lazypipe, and VIRify for virus detection in Khan et al.’s dataset

From: Entourage: all-in-one sequence analysis software for genome assembly, virus detection, virus discovery, and intrasample variation profiling

 

Entourage

Lazypipe

VIRify

3 × sample

0.1 × sample

3 × sample

0.1 × sample

3 × sample

0.1 × sample

Number of groups of expected viruses detected*

5

3

5

2

3†

–

Number of groups of unexpected viruses detected

2

6

5

8

–

–

Total time (hours)

15.06

 16.75

 0.92‡

Maximum memory usage (GB)

116.00

 73.02

 1.61

  1. * Expected viruses – EBV, RSV, FeLV, REO1, HPV18
  2. † VIRify identifies viral sequences at the genus level and above
  3. ‡ VIRify does not include read cleaning and de novo assembly steps