Table 3 Summary of the discovery module outputs from Khan et al.’s dataset analysis.
Contig | Taxon assigned by Entourage discovery module | Contig length (bases) | Contig supporting reads | Contig sequencing depths ( ×) | CheckV genome quality | % CheckV genome completeness | BLASTN best hit organism (acc number) | Sequence % identity | Contig % coverage |
|---|---|---|---|---|---|---|---|---|---|
khan_3x_contig0093 | Propionibacterium phage MEAK | 444 | 12 | 2.66 | Low-quality | 1.48 | Propionibacterium phage MEAK (MF919522.1) | 94.81 | 99 |
khan_3x_contig3267 | Orthoreovirus | 2297 | 1383 | 60.45 | Low-quality | 9.82 | Mammalian orthoreovirus 1 (AF174382.1) | 99.95 | 99 |
khan_3x_contig4022 | Pahexavirus | 457 | 9 | 1.99 | Low-quality | 1.54 | Caudoviricetes sp.(BK038489.1) | 93.36 | 94 |
khan_01x_contig0259 | Caudoviricetes | 401 | 15 | 3.68 | Low-quality | 1.36 | Propionibacterium phage PHL095N00 (NC_027401.1) | 98.75 | 100 |
khan_01x_contig0278 | Caudoviricetes sp. | 611 | 25 | 4.08 | Low-quality | 2.07 | Propionibacterium phage PHL112N00 (NC_022334.1) | 97.22 | 100 |
khan_01x_contig0307 | Propionibacterium phage PacnesP1 | 525 | 20 | 3.82 | Low-quality | 1.78 | Propionibacterium phage PHL095N00 (NC_027401.1) | 94.77 | 98 |
khan_01x_contig1506 | Pahexavirus | 497 | 15 | 3.04 | Low-quality | 1.69 | Caudoviricetes sp. (BK048405.1) | 98.36 | 98 |
khan_01x_contig2619 | Caudoviricetes | 719 | 34 | 4.73 | Low-quality | 2.38 | Propionibacterium phage PHL009M11 (NC_027336.1) | 94.43 | 99 |
khan_01x_contig3549 | Caudoviricetes sp. | 1173 | 50 | 4.27 | Low-quality | 3.98 | Siphoviridae sp. ctkV91 (BK032807.1) | 94.63 | 100 |
khan_01x_contig5237 | human papillomavirus 18 | 901 | 8101 | 894.90 | Low-quality | 11.16 | human papillomavirus 18 (MN164461.1) | 100.00 | 96 |
khan_01x_contig5485 | unclassified Caudoviricetes | 486 | 16 | 3.32 | Low-quality | 0.58 | Propionibacterium phage PHL025M00 (NC_027357.1) | 95.27 | 100 |
khan_01x_contig5542 | Propionibacterium phage Cota | 407 | 11 | 2.64 | Low-quality | 1.38 | Propionibacterium phage Pirate (NC_027623.2) | 94.84 | 100 |