Table 2 Summary of the target detection module outputs from Khan et al.’s dataset analysis.
Virus | Overall sequencing depth ( ×)†| # of contigs | Contig lengths (bases) | Contig supporting reads | Contig sequencing depths ( ×) | % identities against target reference best hits |
|---|---|---|---|---|---|---|
3 × sample | ||||||
EBV | 16.22 | 7 | 2349–42,533 | 495–6558 | 15.53–105.03 | 99.25–100.00 |
RSV | 57.59 | 1 | 15,407 | 8673 | 55.80 | 99.97 |
FeLV | 6.21 | 3 | 649–4093 | 56–357 | 8.37–8.72 | 97.17–100.00 |
REO1 (11 segments) | 51.98* (8.49–77.90) | 11 | 407–3920 | 19–2697 | 4.69–77.83 | 93.64–100.00 |
HPV18 | 3,651.84 | 3 | 1053–2761 | 2130–144,366 | 201.84–5782.25 | 99.96–100.00 |
0.1 × sample | ||||||
EBV | 0.45 | 3 | 427- 977 | 12–44 | 2.80–5.21 | 100.00–100.00 |
RSV | 4.38 | 7 | 407–1176 | 13–180 | 3.23–17.93 | 99.77–100.00 |
FeLV | 0.55 | – | – | – | – | – |
REO1 (11 segments) | 0.47* (0.05–0.82) | – | – | – | – | – |
HPV18 | 7,888.71 | 2 | 1262–5868 | 7514–402,649 | 596.71–6844.17 | 99.96–100.00 |