ProcaryaSV: structural variation detection pipeline for bacterial genomes using short-read sequencing

BMC Bioinformatics

Table 3 F1 scores of the artificial SV dataset (ProcaryaSV minCallersCNV = 2, minCallersINV = 2, minCallersINS = 2)

	Coverage	Deletions	Duplications	Inversions	Insertions
ProcaryaSV	5 ×	97.1	98.5	100.0	27.4
	10 ×	100.0	99.0	99.5	65.1
	20 ×	100.0	99.5	99.5	77.2
	50 ×	99.5	99.5	98.0	76.5
	100 ×	98.0	98.0	95.7	59.3
SURVIVOR	5 ×	83.5	80.2	80.6	0.0
	10 ×	99.5	99.0	97.1	3.8
	20 ×	99.0	99.5	100.0	13.1
	50 ×	97.5	98.0	99.0	12.7
	100 ×	95.1	98.0	97.1	10.7
Parliament2	5 ×	98.0	98.5	87.0	0.0
	10 ×	98.5	99.0	98.5	1.9
	20 ×	98.5	99.5	100.0	8.6
	50 ×	97.4	99.5	100.0	11.8
	100 ×	97.4	99.5	100.0	13.1

ISSN: 1471-2105