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Table 1 Overview of SV detection tools and SV types

From: ProcaryaSV: structural variation detection pipeline for bacterial genomes using short-read sequencing

SV type:

Being called by:

Deletions

DELLY2, LUMPY, PINDEL, CNVnator, CNProScan (5)

Duplications

DELLY2, LUMPY, PINDEL, CNVnator, CNProScan (5)

Inversions

PINDEL, DELLY2, LUMPY (3)

Insertions

PINDEL, DELLY2, LUMPY, INSurVeyor (4)

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BMC Bioinformatics

ISSN: 1471-2105

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