Table 4 List of identified SSRs in coding regions among Escherichia coli groups K12 and the O157 group. These SSRs were subsequently analyzed with the results obtained from SATIN for result comparison
Strain and substrain | No of repeats | Motif | Genomic location, name of ORF | Source |
|---|---|---|---|---|
k12:w3110, b sr9b, ehec, epec, etec | 8 | C | G1787051, gsiA | [25] |
k12:w3110, b sr9b, ehec, epec, etec | 9 | A | G1790021, yibA | [25] |
k12:w3110, b sr9b, ehec, epec, etec | 6 | GC | G1786541, mhpR | [25] |
k12, b, ehec, epec, etec, e:1–69 | 5 | CGG | G1786284, ftsZ | [25] |
k12, b, ehec, epec, etec, e:1–69 | 4 | CTGG | G1788332, hisC | (25) |