CAREx: context-aware read extension of paired-end sequencing data

BMC Bioinformatics

Table 1 Simulated (S1–S8) and real (R1–R4) paired-end datasets used for evaluation

Name	Organism	Cov.	Read pairs (M)	Length	Insert size	SD
S1	C. elegans	30x	15.0	100	300	5
S2	C. elegans	30x	15.0	100	500	10
S3	C. elegans	30x	15.0	100	1000	30
S4	C. elegans	60x	30.1	100	1000	30
S5	D. melanogaster	30x	18.0	100	500	10
S6	Human Chr. 14	30x	13.2	100	500	10
S7	C. elegans	30x	10.1	150	500	150
S8	C. elegans	30x	10.1	150	2500	100
R1	D. melanogaster	64x	37.9	101	598	39
R2	Human Chr. 21	33x	6.7	100	312	14
R3	Human (NA12878)	30x	304.6	148	546	117
R4	Human (NA24385)	31x	311.8	148	568	159

ISSN: 1471-2105