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Fig. 3 | BMC Bioinformatics

Fig. 3

From: Rescuing biologically relevant consensus regions across replicated samples

Fig. 3

Enrichment score distribution (x axis) for MSPC discarded peaks (cyan box), MSPC rescued peaks discarded by IDR (i.e., MSPC-specific peaks set; yellow box), and peaks retained by both MSPC and IDR (i.e., common peaks; green box), aggregated by 9 hg38 annotations (y axis). For each of the 48 TFs analyzed in the K562 cell line, there were no peaks retained by IDR and discarded by MSPC (i.e., MSPC always included IDR results). The 9 hg38 annotations include: CpG islands (n = 31,144), Enhancers (n = 393,964), DNase clusters (n = 2,107,358), Promoters (n = 34,996), Exons (n = 313,276), RefSeq coding transcripts (n = 67,635), RefSeq non-coding transcripts (n = 17,271), Introns (n = 172,751). Coordinates for hg38 annotations were downloaded from the UCSC Genome Browser (accessed on: 2020-01-31) [49]

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