Table 2 Levels of sparsity of the RAS matrix after denoising application on the read counts matrix or on the RAS matrix
From: Combining denoising of RNA-seq data and flux balance analysis for cluster analysis of single cells
| Â | Denoising on read counts matrix | Denoising on RAS matrix | ||||
|---|---|---|---|---|---|---|
Dataset | MAGIC | ENHANCE | SAVER | MAGIC | ENHANCE | SAVER |
GSE110949 | 0.05% (0%) | 8.27% (4.36%) | 0% (0%) | 1.04% (0%) | 10.59% (5.56%) | 0.99% (0%) |
E-GEOD-86618 | 0.01% (0%) | 4.77% (2.47%) | 0% (0%) | 0.04% (0%) | 3.63% (1.23%) | 0% (0%) |
GSE118056 | 1.91% (0.01%) | 5.58% (1.74%) | 0% (0%) | 1.07% (0%) | 9.68% (5.37%) | 0% (0%) |