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Fig. 3 | BMC Bioinformatics

Fig. 3

From: The ranging of amino acids substitution matrices of various types in accordance with the alignment accuracy criterion

Fig. 3

Dependence of the quality indicators of local alignment on the values of the penalty function parameters with the matrix Pfasum050. As in the case of the PAM120 matrix, at all points of the penalty function parameter area, Accuracy values exceed Confidence values. But the difference between Accuracy and Confidence in the case of Pfasum050 is less than in the case of PAM120 matrix

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BMC Bioinformatics

ISSN: 1471-2105

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