Fig. 8
From: A sensitive short read homology search tool for paired-end read sequencing data
The distance comparison between Short-Pair and HMMER on case 2 of the RNA-Seq dataset of Arabidopsis. Three hundred fifty eight domains (Domain index: 2901 - 3258) with the largest distances are listed in the four subplots: a, b, c, and d. X-axis shows the indices of the domains. Smaller value indicates closer domain abundance to the ground truth. The average distances of HMMER, HMMER w/o filtration, HMMER GA cutoff, and Short-Pair are 818.09, 704.65, 1084.50, and 558.60, respectively