Figure 4
An overview of the pre-processing steps taken in MTAP: A. The source genome G j with genes g1, g2, g3 with known binding sites k1, k2, k3, k4, k5 (found clockwise around the genome from the origin); K1 and K2 are the known regulatory proteins that bind to the transcription factors B. Two additional genomes, Gj+1and Gj+2, that are phylogentically closely related to G j . Gj+1and Gj+2also have binding sites C. The background phylogenetic tree constructed via extracting 16S rRNA D. Two tests T1 and T2 corresponding to known positions from K1 and K2.