Figure 3
From: Maximum expected accuracy structural neighbors of an RNA secondary structure
GENE ON (left) and GENE OFF (right) secondary structures for the 148 nt. XPT guanine riboswitch from B. subtilis with sequence CACUCAUAUA AUCGCGUGGA UAUGGCACGC AAGUUUCUAC CGGGCACCGU AAAUGUCCGA CUAUGGGUGA GCAAUGGAAC CGCACGUGUA CGGUUUUUUG UGAUAUCAGC AUUGCUUGCU CUUUAUUUGA GCGGGCAAUG CUUUUUUU. Sequence and secondary structure taken from [35]. The free energy of GENE ON resp. GENE OFF secondary structrure is -16.46 kcal/mol resp. -22.6 kcal/mol. Free energies were determined using RNAeval and figures produced using RNAplot, both from the Vienna RNA Package [40].