Figure 1
From: DNA motif alignment by evolving a population of Markov chains
Trajectories of MC chains. The trajectories were plotted using the CRP binding data. Both IMC and PMC run the same MHS algorithm r times, but with different strategies as described in the text. (A) IMC with r = 5, (B) PMC, r = 5, (C) PMC, r = 10. Each arrow points to the alignment with the highest likelihood H max .